Implementation Of Clustering Algorithm K Mean K Medoid Computer Science Essay

Implementation Of meet Algorithm K Mean K Medoid Computer Science Essay information Mining is a plum recent and contemporary topic in computing. However, Data Mining applies many older computational techniques from statistics, machine learning and pattern recognition. This paper explores two close popular clustering techniques atomic number 18 the k-means k-medoids clustering algorithmic rule. However, k-means algorithm is cluster or to group your objects based on attributes into K number of group andk-medoidsis a relate to theK-meansalgorithm. These algorithms are based on the k partition algorithms and both attempt to minimizesquared error. In contrast to the K-means algorithm K-medoids chooses info points as centres. The algorithms save been developed in Java, for integration with weka Machine Learning Software. The algorithms have been prolong with two data beat Facial palsy and Stemming. It is having been shown that the algorithm is generally faster and much(prenomina l) accurate than both(prenominal) other clustering algorithms.Data Mining derives its name from the similarities between searching for valuable business information in a large database (for example, purpose linked products in gigabytes of store s ceasener data) and excavation a mountain for a vein of valuable ore.1 Both process requires either sifting done an immense amount of material. Or intelligently probing it to find exactly where the take to be resides.Data MiningData mining is likewise known as knowledge mining. Before it was named DATA MINING, it was called data collection, data warehousing or data access. Data mining tools predicts the behaviours of the models that are loaded in the data mining tools (like Weka) for analysis, leaseing making predicted analysis, of the model. Data mining provides hands-on and practical information.Data mining is the most powerful tool available now. Data mining rouse be used for modelling in fields such as artificial intelligence, a nd neural net hightail it.What does it do?Data mining take the data which exists in orthogonal patterns and designs, and uses this data to predict information which can be compared in terms of statistical and graphical emergences. Data mining distil / filters the information from the data that is stimulationted and nett model is generated.ClusteringWhat is cluster analysis? Unlike classification and prediction, which analyse class-labeled data objects, clustering analyses data objects without consulting a known class label.A 2-D plat of customer data with respect to customer locations in a city, showing three data clusters. each cluster center is marked with a +.6Clustering is the technique by which like objects are grouped to removeher. The objects are clustered or grouped based on the principle of maximizing the intra class similarity and minimizing the interclass similarity. i.e. clusters of the objects are made so that the clusters have resemblance in comparison to one anot her, but are very divergent to objects in other clusters. Each cluster that is made can be viewed as a class of objects, from which rules can be derived. 6Problem overviewThe problem at hand is able to powerful cluster a facial palsy dataset which is get hold ofn by our lecturer. This section will provide an overview of dataset being analysed, and description about dataset that we use in this implementation.Data Set1.3.1.1 Facial_Palsy_svmlight_formatFacial Palsy data is for binary classification.+1 severe facial palsy faces-1 Non-severe or normal faces66 Principal components generated from 5050 Hamming blank space images1.3.1.2 A6_df2_stemming__svmAttributes 100A6_df2_stemming__svm_100.dat+1 Open question-1 Closed questionSection 2 MethodologyThis section will firstly discuss the methodology stinker K-means k-medoids algorithm. It is than followed by steps to implement k-means and k medoids algorithms. How many input, getup and what are the steps to perform k-means and k-med oids.2.1 K-meanK-means clustering starts with a single cluster in the centre, as the mean of the data. Here after the cluster is split into 2 clusters and the mean of the new cluster are iteratively trained. Again these clusters are split and the process goes on until the specified numbers of the cluster are obtained. If the specified number of cluster is not a power of two, then the nearest power of two supra the number specified is selected and then the least important clusters are removed and the remaining clusters are again iteratively trained to get the final clusters. If the drug user specifies the ergodic start, hit-or-miss cluster is generated by the algorithm, and it goes ahead by fitting the data points into these clusters. This process is repeated many times in loops, for as many random numbers the user chooses or specifies and the best value is found at the end. The output values are displayed.The drawbacks of the clustering method are that, the measurement of the err ors or the uncertainty is ignored associated with the data.Algorithm The k-means algorithm for partitioning, where each clusters centre is represented by the mean value of the objects in the cluster.Inputk the number of clusters,D a data set containing n objects.Output A set of k clusters.Method(1) Arbitrarily choose k objects from D as the initial cluster centers(2) Repeat(3) reassign each object to the cluster to which the object is the most similar, based on the mean value of the objects in the cluster(4) update the cluster means, i.e., calculate the mean value of the objects for each cluster(5) Until no changeWhere E is the spousal relationship of the square error for all objects in the data set p is the point in space representing a given object and mi is the mean of cluster Ci (both p and mi are multidimensional). In other words, for each object in each cluster, the blank space from the object to its cluster center is squared, and the places are sum upmed. This criterion t ries to make the resulting k clusters as compact and as separate as possible.2Clustering of a set of objects based on the k-means method. (The mean of each cluster is marked by a +.)2.2 K- MedoidsThis report recommends a new algorithm for K-medoids, which runs like the K-means algorithm. The algorithm proposed scans and calculates distance matrix, and use it for finding new medoids at every constant and repetitive step. The paygrade is based on real and artificial data and is compared with the results of the other algorithms.Here we are discussing the approach on k- medoids clustering, using the k-medoids algorithm. The algorithm is to be implemented on the dataset which consist of uncertain data. K-medoids are implemented because they to represent the centrally located objects called medoids in a cluster. Here the k-medoids algorithm is used to find the representative objects called themedoidsin the dataset.Algorithm k-medoids. PAM, a k-medoids algorithm for partitioning based on medoids or central objects.Inputk the number of clusters,D a data set containing n objects.Output A set of k clusters.Method(1) Arbitrarily choose k objects in D as the initial representative objects or seeds(2) Repeat(3) Assign each remaining object to the cluster with the nearest representative object(4) Randomly select a no representative object, o random(5) Compute the total cost, S, of swapping representative object, oj, with o random(6) If S (7) Until no changeWhere E is the sum of the absolute error for all objects in the data set p is the point in space representing a given object in cluster Cj and oj is the representative object of Cj. In general, the algorithm iterates until, eventually, each representative object is actually the medoids, or most centrally located object, of its cluster. This is the basis of the k-medoids method for grouping n objects into k clusters.62.3 Distance intercellular substanceAn important step in most clustering is to select adistance measure, w hich will determine how thesimilarityof two elements is calculated.Common distance metricsEuclideanManhattanMinkowskiHamming etcHere in our implementation we choose two distance matrix that you can see below with description.2.3.1 Euclidean Distance carefulTheEuclidean distancebetween pointspandqis the length of theline segment. InCartesian coordinates, ifp=(p1,p2pn) and q=(q1,q2qn) are two points inEuclideann-space, then the distance fromptoqis given by2.3.2 Manhattan Distance MetricThe Manhattan (or taxicab) distance,d1, between two vectorsin an n-dimensionalrealvector spacewith fixedCartesian coordinate system, is the sum of the lengths of the projections of theline segmentbetween the points onto thecoordinate axes.Section 3 DiscussionIn this section we are discussing about how Weka Machine learning work and how we implemented both k-means and k medoids algorithm. To implement these two algorithms we use Java and we are explaining how we implemented in java which social funct ion we use in place to implement these two algorithms.3.1 Weka Machine LearningWeka is a machine learning software made using Java and many other languages. Weka has a collection of tools that are used to analyse the data that the user inputs in the form of dataset files. Weka supports more than four different input data formats. Weka uses an interactive GUI interface, which is easy for the user to use.Weka provides the functionality for testing and visual aid options that can be used by the user to compare and sort the results.3.2 ImplementationIn this section, we discuss about implementation of 2 clustering algorithms K-Means and K-Medoids. Here, we use Object Oriented Programming to implement these 2 algorithms. The structure of program as below at that place are 3 packages K-Mean, K-Medoid, main.Files in K-Mean packageCentroid.javaCluster.javaKMean_Algorithm.javaKMean_Test.javaKMean_UnitTest.javaFiles in K-Medoid packageKMedoid_Algorithm.javaKMedoid_UnitTest.javaFiles in main p ackageAttribute.javaDataPoint.javaDistanceCalculation.javaFileFilter.javaMainFrame.javaUtilities.javThere are some main functions implemented for clustering occupation as below3.2.1 read_SVMLightFile_ direct_up_missing_attribute()This function is about reading the SVM Light data file (.dat) and fill up all the missing attributes/values in data file before returning a Vector of data-points for clustering activity.3.2.2 calculate_distance()This function is providing calculation concord to the distance metric input in order to calculate distance between data objects for clustering activity. Overall, this function provides calculation for 3 different distance metrics as Euclidean, Manhattan and Minkowski.3.2.3 startClustering()This function is about running a particular clustering algorithm and returns a Vector of Clusters with their own data-points inside. All the steps of a particular clustering algorithm is implemented, here we implement K_Means and K_Medoids clustering algorithms. 3.2.4 calculateSumOfSquareError()This function is about calculating the total/sum square error for all the output clusters. By calling the function calculateSquareError() inside every cluster and sum up, the sum of Square Error will be calculated as extensive as the clustering activity finished.3.2.5 calculateSumOfAbsoluteError()This function is about calculating the total/sum absolute error for all the output clusters. By calling the function calculateAbsoluteError() inside every cluster and sum up, the sum of Absolute Error will be calculated as long as the clustering activity finished.3.2.6 toString() and main()The toString() function will return a string which represents the clustering output, including total objects of every cluster, percent of object in every cluster, the error (such as sum of square error or sum of absolute error), the centroid of every cluster and all the data-points clustered in the clusters.The main() function inside MainFrame.java class will allow to exe cute the GUI of the program, so users can interact with system by GUI instead of console or command-line. In this GUI, users can choose cause of distance metric (such as Euclidean and Manhattan), Clustering algorithm (such as K-Means and K-Medoids) and enter input parameters such as number of clusters and number of iterations for clustering activity. Besides, users also can open any data file to view or modify and save before running clustering as well as export the original data file with missing attributes/values to new processed data file with all missing values filled up by zero (0).Section 4 AnalysisIn order to access the mathematical process of the K-means k-medoids clusters, two dataset of analyses was carried out. The aim of this set to tests was provide an indicator as to how well the clusters performed using the k-means and k-medoids function. The tests were involved comparing the cluster to other cluster of various types provided within Weka cluster suite. The results are summarised throughout the remainder of this section.4.1 test (Facial Palsy dataset) results vs. WekaHere In this section how we did a comparison with our application algorithm vs. Weka you can see below.In this pattern we give iterations when we run a dataset with our application and Weka.Iterations 10 30 50 100 200 300 400 500In this pattern we give a cluster when we run a dataset with our application and Weka.Clusters 2 3 4 5After we run dataset with this format than each and every run we get result we immix that result, compare with Weka, we make a total of each and every column and come with average and we are displaying in table that you can see in below table.This Symbol is object. To see a result please click on this object it will show you result. We put as object because result is too big in size so we are not able to put in this A4 page.4.2 Experiment (Stemming Question dataset) results vs. WekaHere In this section how we did a comparison with our applicat ion algorithm vs. Weka you can see below.In this pattern we give iterations when we run a dataset with our application and Weka.Iterations 10 30 50 100 200 300 400 500In this pattern we give a cluster when we run a dataset with our application and Weka.Clusters 2 3 4 5After we run dataset with this format than each and every run we get result we combine that result, compare with Weka, we make a total of each and every column and come with average and we are displaying in table that you can see in below table.This Symbol is object. To see a result please click on this object it will show you result. We put as object because result is too big in size so we are not able to put in this A4 page.Section 5 ConclusionIn evaluating the performance of data mining techniques, in addition to predicative accuracy, some researchers have been done the importance of the explanatory nature of models and the need to reveal patterns that are valid, novel, useable and may be most importantl y understandable and explainable. The K-means and k-medoids clusters achieved this by successfully clustering with facial palsy dataset.Which method is more robust-k-means or k-medoids? The k-medoids method is more robust than k-means in the presence of noise and outliers, because a medoids is less influenced by outliers or other extreme values than a mean. However, its processing is more pricey than the k-means method. Both methods require the user to specify k, the number of clusters.Aside from using the mean or the medoids as a measure of cluster center, other alternate measures are also commonly used in partitioning clustering methods. The median can be used, resulting in the k-median method, where the median or middle value is taken for each ordered attribute. Alternatively, in the k-modes method, the most frequent value for each attribute is used.5.1 Future WorkThe K-means algorithm can create some in efficiency as it scans the dataset leaving some noise and outliners. These small flaws can be considered major to some of the users, but this doesnt means that the implementation can be prevented. It is always possible that sometimes the dataset is more efficient to follow other algorithms more efficiently, and the result distribution can be equal or acceptable. It is always advisable to make the dataset more efficient by removing unwanted attributes and more meaning full by pre-processing the nominal values to the numeric values.5.2 aestivalThroughout this report the k-mean and the k-medoids algorithms are implemented, which find the best result by scanning the dataset and creating clusters. The algorithm was developed using Java API and more Java classes.